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How to Set Up a Primer Matrix

The Polymerase Chain Reaction, or PCR, is a technique used to make copies of DNA. Specifically, PCR uses an enzyme known as a polymerase, which adds individual DNA bases to a growing chain of DNA. The PCR reaction is dependent upon the primers, short strands of DNA the polymerase needs to begin reproducing DNA, and the primer matrix, a mixture of reagents and the primers themselves. Each PCR reaction should be a total volume of no more than 50 uL.

Things You'll Need

  • 10x PCR Buffer
  • 2mM dNTP
  • 50pmol primers
  • 25mM MgCl2
  • 1 pmol template DNA
  • Purified water
  • Eppendorf tubes
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Instructions

    • 1

      Add 2.5 uL of the PCR buffer to an Eppendorf tube, as well as 2.5 uL of the dNTPs.

    • 2

      Add 2 uL (50 pmol) of the primers to the Eppendorf tube and 1 uL of MgCl2.

    • 3

      Add water to reach a final volume of 50 uL. Add 1 pmol of the template DNA, or 1 uL of DNA solution, whichever is easier to measure. Your primer matrix is prepared.

    • 4

      Repeat Steps 1 through 3 for as many matrices as you want to prepare.


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